PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244773.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 443aa    MW: 49156.6 Da    PI: 7.2469
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244773.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.26.1e-08347387954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  XP_008244773.1 347 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 387
                     69******************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.237338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-14344401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-13344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-12346400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-5347387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-4360392No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDGSDWDGSY ITNTSTLLWN NHQVHDLEER LLVSRSGPSA FIPIREFQKV QTSHAIMNST  60
TERASNSAQI VHQQNPYLLD SVHAMPTLRA DQFCQAPLMI NKPNYNLMGS PSTTGIFMAA  120
DHYGDTGKHV QTQVIHGLQD HGRAKPATTR SVESLDCLLS GTNSNTDTSV EDDDGISMLF  180
SDCRRNLWNF GAGNNSAISS GESENNETVV SQSSSDLYVQ SQGKKHSTKR SHDQSELHGA  240
NHSHFGLLQT DSSTTEGGFR LISENPPNPK KPRSDKRPSS SNINFQQPSS SVSASSIEEP  300
DPEVIAQMKE MIYRAAAFRP VNLGMDMVER PKRKNVKISS DPQTVAARQR RERISERIRV  360
LQRLVPGGSK MDTASMLDEA ANYLKFLRSQ VKALENLGQK IESMSNSNIP PTSFAFSFNP  420
SFPMQTHHHV PLHNSNHIHQ PHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347352RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244773.10.0PREDICTED: transcription factor bHLH87
SwissprotQ8S3D23e-88BH087_ARATH; Transcription factor bHLH87
TrEMBLM5X9H70.0M5X9H7_PRUPE; Uncharacterized protein
STRINGVIT_09s0002g02700.t011e-133(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-70bHLH family protein